PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G21400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 417aa    MW: 44113.1 Da    PI: 7.9501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G21400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-1867114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++q+G g+W++ + + g++R++k+c++rw +yl
  OMERI02G21400.1  67 KGPWTPEEDQKLLAYIEQHGHGCWRSLPTKAGLRRCGKSCRLRWTNYL 114
                      79********************************************97 PP

2Myb_DNA-binding54.13.6e-17120165148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  OMERI02G21400.1 120 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 165
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2559117IPR009057Homeodomain-like
PROSITE profilePS5129418.74162114IPR017930Myb domain
SuperFamilySSF466894.77E-3064161IPR009057Homeodomain-like
SMARTSM007172.5E-1566116IPR001005SANT/Myb domain
PfamPF002491.6E-1667114IPR001005SANT/Myb domain
CDDcd001671.27E-1169114No hitNo description
PROSITE profilePS5129426.333115169IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26118169IPR009057Homeodomain-like
SMARTSM007175.8E-17119167IPR001005SANT/Myb domain
PfamPF002492.3E-16120165IPR001005SANT/Myb domain
CDDcd001671.07E-11122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPLVDWTSGP WPPNHCTGGH YCTRSISGKK SSRLSRSGGL GDLEWLIDRS ERMGRSPCCE  60
KEAGLKKGPW TPEEDQKLLA YIEQHGHGCW RSLPTKAGLR RCGKSCRLRW TNYLRPDIKR  120
GKFTLQEEQT IIQLHALLGN RWSAIATHLP KRTDNEIKNY WNTHLKKRLA KMGIDPVTHK  180
PRVEADVAGG GGGXXXXXXX XXXXXXAGGG GGGAAGGGAR SRAAAHLSHT AQWESARLEA  240
EARLAREAKL RALASPPATA TAALSGVDSP TSTLSFSESA LFGAGSAAPD IHGAARAAPA  300
AAVQAVQSSY GEACQEHHFG GATAETSFAG AGTLAGVLLD CSVTGADQRF AARTEACSGE  360
LQGEDDDDKG YWNSILNMVN SSMSSSSSSL TSEVVTDTEM FLPAAAAAAA SATPVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27651695108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061610.0AP006161.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1267B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624862.10.0PREDICTED: myb-related protein Zm38
TrEMBLA0A0E0CMG10.0A0A0E0CMG1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA008493-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g36890.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-85myb domain protein 16